MamPol Home Page Search Analysis Help Page Statistics Links Contact us
  (1) Mammalia (2) Rodentia (3) Primates (4) All  
(1) Nuclear (2) Mitochondrial (3) Both


MITOCHONDRIAL STATISTICS FOR THE MAMMALIA CLASS
Sat Feb 6 20:31:14 2010

Contents of the Secondary Database
  • Total number of mitochondrial Polymorphic sets analyzed: 3915
  • Number of Sequences analyzed: 33120
    • Number of different Species analyzed: 2161
    • Number of different Genes analyzed: 13
    • Total number of Analysis units: 4686 [Phylogeny]
      (average number of analysis units per polymorphic set: 1.2)
      • CDS: 4673
      • exon: 13
      • intron:
      • 5ŽUTR:
      • 3ŽUTR:
      • promoter:

      •  

QUALITY OF THE ALIGNMENTS:

  • Number of Analysis units according to the "Number of sequences":
    • Low quality (2-5): 3426
    • Medium quality (6-10): 565
    • High quality (>10): 695
       
  • Number of Analysis units according to the "Percentage of gaps or ambiguous bases":
    • Low quality (≥30% =  ! ): 14
    • Medium quality (≥10%-<30% =    K ): 25
    • High quality (<10% =   J ): 4647
       
  • Number of Analysis units according to the "Percentage of difference in size between the longest and the shortest sequences":
    • Low quality (≥30% =  ! ): 568
    • Medium quality (≥10%-<30% =    K ): 328
    • High quality (<10% =   J ): 3790
       

SET CONFIDENCE:

  • Existence in NCBI PopSet*: 46.8% (2195/4686)
  • Consecutive GenBank accession numbers**: 30.7% (1439/4686)
  • One or more shared references**: 41.0% (1919/4686)
  • Journals* (Genetics, Mol.Biol.Evol., J.Mol.Evol., Mol.Phylogenet.Evol.): 35.1% (1644/4686)

* At least one sequence in the set
** All the sequences in the set


AVERAGES BY GENE REGIONS:

  #Aligns #Polym. sets G+C Num. seqs. Align. length. Analyzed sites θ (Theta) π (Pi)
CDS 4673391540.369.0880.9784.30.010230.00975
exon 13943.554.6498.2491.80.019570.01906


Get your own lists and graphics from the Graphical Search Tool

 

Contents of the Primary the Database

  • Total number of Sequences: 38798
    • Number of different Species: 3679
    • Number of different Genes: 74
       
  • Total number of References 26708
    • Published: 7903
    • Submitted: 12941
    • In press: 331
    • Published Only in Database: 142
    • Unpublished: 4557
    • Thesis: 56
    • Number of different Journals: 546

 




DGM UAB