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(1) Nuclear (2) Mitochondrial (3) Both


GENERAL STATISTICS FOR THE MAMMALIA GROUP
Mon Feb 8 11:48:42 2010

Contents of the Secondary Database
  • Total number of Polymorphic sets analyzed: 4693
  • Number of Sequences analyzed: 36733
    • Number of different Species analyzed: 1367
    • Number of different Genes analyzed: 828
    • Total number of Analysis units: 8667 [Phylogeny]
      (average number of analysis units per polymorphic set: 1.8)
      • CDS: 5723
      • exon: 1951
      • intron: 799
      • 5ŽUTR: 46
      • 3ŽUTR: 90
      • promoter: 58

      •  

QUALITY OF THE ALIGNMENTS:

  • Number of Analysis units according to the "Number of sequences":
    • Low quality (2-5): 7131
    • Medium quality (6-10): 765
    • High quality (>10): 771
       
  • Number of Analysis units according to the "Percentage of gaps or ambiguous bases":
    • Low quality (≥30% =  ! ): 32
    • Medium quality (≥10%-<30% =    K ): 85
    • High quality (<10% =   J ): 8550
       
  • Number of Analysis units according to the "Percentage of difference in size between the longest and the shortest sequences":
    • Low quality (≥30% =  ! ): 1013
    • Medium quality (≥10%-<30% =    K ): 725
    • High quality (<10% =   J ): 6929
       

SET CONFIDENCE:

  • Existence in NCBI PopSet*: 31.2% (2702/8667)
  • Consecutive GenBank accession numbers**: 34.6% (3001/8667)
  • One or more shared references**: 44.5% (3861/8667)
  • Journals* (Genetics, Mol.Biol.Evol., J.Mol.Evol., Mol.Phylogenet.Evol.): 19.0% (1643/8667)

* At least one sequence in the set
** All the sequences in the set


AVERAGES BY GENE REGIONS:

  #Aligns #Polym. sets G+C Num. seqs. Align. length. Analyzed sites θ (Theta) π (Pi)
3ŽUTR 908747.323.4433.5306.50.003820.00375
5ŽUTR 464456.603.3287.8195.90.003540.00360
CDS 5723433447.746.8713.2600.50.010920.01062
exon 195073855.744.1251.1217.40.011480.01138
intron 79950245.737.1668.6575.30.004520.00449
promoter 585548.735.71046.5647.20.002930.00279


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Contents of the Primary the Database

  • Total number of Sequences: 60579
    • Number of different Species: 2355
    • Number of different Genes: 4594
       
  • Total number of References 11229
    • Published: 2234
    • Submitted: 5890
    • In press: 140
    • Published Only in Database: 79
    • Unpublished: 2529
    • Thesis: 26
    • Number of different Journals: 304

 




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