Contents of the Secondary Database
- Total number of nuclear Polymorphic
sets analyzed: 2377
- Number of Sequences analyzed: 18804
- Number of different
Species analyzed: 588
- Number of different
Genes analyzed: 817
- Total number of Analysis units: 5946 [Phylogeny]
(average number of
analysis units per polymorphic set: 2.5)- CDS: 3002
- exon: 1951
- intron: 799
- 5ŽUTR: 46
- 3ŽUTR: 90
- promoter: 58
QUALITY OF
THE ALIGNMENTS:
- Number of Analysis units
according to the "Number of sequences":
- Low quality (2-5): 5102
- Medium quality (6-10): 457
- High quality (>10):
387
- Number of Analysis units
according to the "Percentage of gaps or ambiguous bases":
- Low quality (≥30%
=
! ): 19
- Medium quality (≥10%-<30%
=
K
): 67
- High quality (<10%
= J
): 5860
- Number of Analysis units
according to the "Percentage of difference in size between
the longest and the shortest sequences":
- Low quality (≥30%
=
! ): 667
- Medium quality (≥10%-<30%
=
K
): 530
- High quality (<10%
= J
): 4749
SET
CONFIDENCE:
- Existence in NCBI PopSet*: 24.9%
(1482/5946)
- Consecutive GenBank accession numbers**: 37.9%
(2254/5946)
- One or more shared references**: 48.8%
(2901/5946)
- Journals* (Genetics,
Mol.Biol.Evol., J.Mol.Evol., Mol.Phylogenet.Evol.): 9.9%
(588/5946)
* At least one sequence in the set
** All the sequences in the set
AVERAGES BY GENE REGIONS:
| |
#Aligns |
#Polym. sets |
G+C |
Num. seqs. |
Align. length. |
Analyzed sites |
θ (Theta) |
π (Pi) |
| 3ŽUTR |
90 | 87 | 47.32 | 3.4 | 433.5 | 306.5 | 0.00382 | 0.00375 | | 5ŽUTR |
46 | 44 | 56.60 | 3.3 | 287.8 | 195.9 | 0.00354 | 0.00360 | | CDS |
3002 | 2018 | 54.12 | 4.7 | 560.8 | 436.7 | 0.01226 | 0.01217 | | exon |
1950 | 738 | 55.74 | 4.1 | 251.1 | 217.4 | 0.01148 | 0.01138 | | intron |
799 | 502 | 45.73 | 7.1 | 668.6 | 575.3 | 0.00452 | 0.00449 | | promoter |
58 | 55 | 48.73 | 5.7 | 1046.5 | 647.2 | 0.00293 | 0.00279 |
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Contents of the Primary
the Database
- Total number of Sequences: 39879
- Number of different
Species:
1577
- Number of different
Genes:
4554
- Total number of References
11229
- Published: 2234
- Submitted: 5890
- In press: 140
- Published Only in Database: 79
- Unpublished: 2529
- Thesis: 26
- Number of different
Journals:
304
| 
