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  (1) Mammalia (2) Rodentia (3) Primates (4) All  
(1) Nuclear (2) Mitochondrial (3) Both


NUCLEAR STATISTICS FOR THE PRIMATES ORDER
Sat Feb 6 19:32:13 2010

Contents of the Secondary Database
  • Total number of nuclear Polymorphic sets analyzed: 1044
  • Number of Sequences analyzed: 11441
    • Number of different Species analyzed: 166
    • Number of different Genes analyzed: 454
    • Total number of Analysis units: 2769 [Phylogeny]
      (average number of analysis units per polymorphic set: 2.7)
      • CDS: 1343
      • exon: 939
      • intron: 369
      • 5ŽUTR: 29
      • 3ŽUTR: 26
      • promoter: 63

      •  

QUALITY OF THE ALIGNMENTS:

  • Number of Analysis units according to the "Number of sequences":
    • Low quality (2-5): 2119
    • Medium quality (6-10): 342
    • High quality (>10): 308
       
  • Number of Analysis units according to the "Percentage of gaps or ambiguous bases":
    • Low quality (≥30% =  ! ): 10
    • Medium quality (≥10%-<30% =    K ): 34
    • High quality (<10% =   J ): 2725
       
  • Number of Analysis units according to the "Percentage of difference in size between the longest and the shortest sequences":
    • Low quality (≥30% =  ! ): 160
    • Medium quality (≥10%-<30% =    K ): 153
    • High quality (<10% =   J ): 2456
       

SET CONFIDENCE:

  • Existence in NCBI PopSet*: 18.2% (505/2769)
  • Consecutive GenBank accession numbers**: 50.1% (1387/2769)
  • One or more shared references**: 69.4% (1921/2769)
  • Journals* (Genetics, Mol.Biol.Evol., J.Mol.Evol., Mol.Phylogenet.Evol.): 24.3% (674/2769)

* At least one sequence in the set
** All the sequences in the set


AVERAGES BY GENE REGIONS:

  #Aligns #Polym. sets G+C Num. seqs. Align. length. Analyzed sites θ (Theta) π (Pi)
3ŽUTR 262652.1643.1386.5360.60.002920.00281
5ŽUTR 292454.3430.061.159.10.012480.01253
CDS 134391056.036.4561.2464.60.009440.00941
exon 93934256.034.8239.6224.90.009220.00917
intron 36322052.585.1574.6538.20.007130.00696
promoter 635447.6627.9687.5626.80.007840.00784


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Contents of the Primary the Database

  • Total number of Sequences: 23120
    • Number of different Species: 316
    • Number of different Genes: 2158
       
  • Total number of References 2730
    • Published: 750
    • Submitted: 1404
    • In press: 65
    • Published Only in Database: 9
    • Unpublished: 415
    • Thesis: 6
    • Number of different Journals: 148

 




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