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  (1) Mammalia (2) Rodentia (3) Primates (4) All  
(1) Nuclear (2) Mitochondrial (3) Both


MITOCHONDRIAL STATISTICS FOR THE RODENTIA ORDER
Sat Feb 6 15:22:24 2010

Contents of the Secondary Database
  • Total number of mitochondrial Polymorphic sets analyzed: 968
  • Number of Sequences analyzed: 10968
    • Number of different Species analyzed: 766
    • Number of different Genes analyzed: 13
    • Total number of Analysis units: 1239 [Phylogeny]
      (average number of analysis units per polymorphic set: 1.3)
      • CDS: 1234
      • exon: 5
      • intron:
      • 5ŽUTR:
      • 3ŽUTR:
      • promoter:

      •  

QUALITY OF THE ALIGNMENTS:

  • Number of Analysis units according to the "Number of sequences":
    • Low quality (2-5): 873
    • Medium quality (6-10): 150
    • High quality (>10): 216
       
  • Number of Analysis units according to the "Percentage of gaps or ambiguous bases":
    • Low quality (≥30% =  ! ): 1
    • Medium quality (≥10%-<30% =    K ): 7
    • High quality (<10% =   J ): 1231
       
  • Number of Analysis units according to the "Percentage of difference in size between the longest and the shortest sequences":
    • Low quality (≥30% =  ! ): 162
    • Medium quality (≥10%-<30% =    K ): 93
    • High quality (<10% =   J ): 984
       

SET CONFIDENCE:

  • Existence in NCBI PopSet*: 47.1% (583/1239)
  • Consecutive GenBank accession numbers**: 34.9% (432/1239)
  • One or more shared references**: 50.7% (628/1239)
  • Journals* (Genetics, Mol.Biol.Evol., J.Mol.Evol., Mol.Phylogenet.Evol.): 30.6% (379/1239)

* At least one sequence in the set
** All the sequences in the set


AVERAGES BY GENE REGIONS:

  #Aligns #Polym. sets G+C Num. seqs. Align. length. Analyzed sites θ (Theta) π (Pi)
CDS 123496839.519.6975.2872.00.012430.01183
exon 5439.993.4724.2707.40.006910.00651


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Contents of the Primary the Database

  • Total number of Sequences: 13143
    • Number of different Species: 1449
    • Number of different Genes: 64
       
  • Total number of References 13175
    • Published: 5015
    • Submitted: 5784
    • In press: 132
    • Published Only in Database: 54
    • Unpublished: 1624
    • Thesis: 25
    • Number of different Journals: 348

 




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